52 lines
3.2 KiB
Plaintext
Executable File
52 lines
3.2 KiB
Plaintext
Executable File
#
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# VTML200
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#
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# This matrix was produced by scripts written by
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# Kai Kneutgen and Tobias Mueller [Mai-2002]
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#
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# VTML200 substitution matrix, Units = Third-Bits
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#
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# Expected Score = -1.038 Third-Bits
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# Lowest Score = -6.432
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# Highest Score = 15.127
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# Entropy H = 0.420 Bits
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#
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#
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# For further information on the VTML substitution model, see
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#
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# Estimating Amino Acid Substitution Models:
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# A Comparison of Dayhoff's Estimator, the Resolvent Approach and a Maximum Likelihood Method.
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# T. Mueller, R. Spang and M. Vingron
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# Mol Biol Evol 19(1): 8-13. 2002.
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#
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# or mail to
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# Tobias.Mueller@molgen.mpg.de
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#
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# The latest version of this perl script can be downloaded at
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# http://www.molgen.mpg.de/~muelle_t
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A R N D C Q E G H I L K M F P S T W Y V B Z X *
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A 4 -2 -1 -1 1 -1 -1 0 -2 -1 -2 -1 -1 -3 0 1 1 -4 -3 0 -1 -1 -1 -6
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R -2 7 0 -2 -3 2 -1 -2 1 -3 -3 4 -2 -4 -1 -1 -1 -3 -2 -3 -1 0 -1 -6
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N -1 0 6 3 -2 1 1 0 1 -4 -4 1 -3 -4 -2 1 0 -5 -2 -3 4 1 -1 -6
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D -1 -2 3 6 -4 1 3 -1 0 -5 -5 0 -4 -6 -1 0 -1 -6 -4 -4 5 2 -2 -6
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C 1 -3 -2 -4 12 -3 -4 -2 -2 0 -3 -4 -1 -3 -3 1 0 -6 0 1 -3 -4 -1 -6
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Q -1 2 1 1 -3 5 2 -2 2 -3 -2 2 -1 -3 -1 0 0 -6 -3 -2 1 4 -1 -6
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E -1 -1 1 3 -4 2 5 -1 0 -4 -4 1 -3 -5 -1 0 -1 -6 -3 -3 2 4 -1 -6
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G 0 -2 0 -1 -2 -2 -1 8 -2 -6 -5 -2 -4 -5 -2 0 -2 -5 -5 -4 0 -2 -2 -6
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H -2 1 1 0 -2 2 0 -2 8 -3 -2 0 -3 0 -2 0 -1 -1 3 -3 1 1 0 -6
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I -1 -3 -4 -5 0 -3 -4 -6 -3 5 3 -3 2 0 -4 -3 -1 -2 -2 4 -4 -3 -1 -6
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L -2 -3 -4 -5 -3 -2 -4 -5 -2 3 5 -3 3 2 -3 -3 -2 -1 -1 2 -5 -3 -1 -6
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K -1 4 1 0 -4 2 1 -2 0 -3 -3 5 -2 -5 -1 0 0 -4 -3 -3 0 2 -1 -6
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M -1 -2 -3 -4 -1 -1 -3 -4 -3 2 3 -2 6 1 -3 -2 -1 -3 -2 2 -3 -2 -1 -6
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F -3 -4 -4 -6 -3 -3 -5 -5 0 0 2 -5 1 8 -4 -3 -3 3 5 -1 -5 -4 -1 -6
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P 0 -1 -2 -1 -3 -1 -1 -2 -2 -4 -3 -1 -3 -4 9 0 -1 -4 -5 -3 -1 -1 -2 -6
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S 1 -1 1 0 1 0 0 0 0 -3 -3 0 -2 -3 0 4 2 -4 -2 -2 1 0 -1 -6
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T 1 -1 0 -1 0 0 -1 -2 -1 -1 -2 0 -1 -3 -1 2 4 -5 -3 0 0 -1 -1 -6
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W -4 -3 -5 -6 -6 -6 -6 -5 -1 -2 -1 -4 -3 3 -4 -4 -5 15 4 -4 -5 -6 -2 -6
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Y -3 -2 -2 -4 0 -3 -3 -5 3 -2 -1 -3 -2 5 -5 -2 -3 4 9 -2 -3 -3 -1 -6
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V 0 -3 -3 -4 1 -2 -3 -4 -3 4 2 -3 2 -1 -3 -2 0 -4 -2 4 -3 -3 -1 -6
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B -1 -1 4 5 -3 1 2 0 1 -4 -5 0 -3 -5 -1 1 0 -5 -3 -3 4 1 -1 -6
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Z -1 0 1 2 -4 4 4 -2 1 -3 -3 2 -2 -4 -1 0 -1 -6 -3 -3 1 4 -1 -6
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X -1 -1 -1 -2 -1 -1 -1 -2 0 -1 -1 -1 -1 -1 -2 -1 -1 -2 -1 -1 -1 -1 -1 -6
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* -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 1
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