26 lines
1.2 KiB
Plaintext
Executable File
26 lines
1.2 KiB
Plaintext
Executable File
#
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# This matrix was created by Todd Lowe 12/10/92
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#
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# Uses ambiguous nucleotide codes, probabilities rounded to
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# nearest integer
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#
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# Lowest score = -4, Highest score = 5
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#
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A T G C S W R Y K M B V H D N
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A 5 -4 -4 -4 -4 1 1 -4 -4 1 -4 -1 -1 -1 -2
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T -4 5 -4 -4 -4 1 -4 1 1 -4 -1 -4 -1 -1 -2
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G -4 -4 5 -4 1 -4 1 -4 1 -4 -1 -1 -4 -1 -2
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C -4 -4 -4 5 1 -4 -4 1 -4 1 -1 -1 -1 -4 -2
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S -4 -4 1 1 -1 -4 -2 -2 -2 -2 -1 -1 -3 -3 -1
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W 1 1 -4 -4 -4 -1 -2 -2 -2 -2 -3 -3 -1 -1 -1
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R 1 -4 1 -4 -2 -2 -1 -4 -2 -2 -3 -1 -3 -1 -1
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Y -4 1 -4 1 -2 -2 -4 -1 -2 -2 -1 -3 -1 -3 -1
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K -4 1 1 -4 -2 -2 -2 -2 -1 -4 -1 -3 -3 -1 -1
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M 1 -4 -4 1 -2 -2 -2 -2 -4 -1 -3 -1 -1 -3 -1
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B -4 -1 -1 -1 -1 -3 -3 -1 -1 -3 -1 -2 -2 -2 -1
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V -1 -4 -1 -1 -1 -3 -1 -3 -3 -1 -2 -1 -2 -2 -1
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H -1 -1 -4 -1 -3 -1 -3 -1 -3 -1 -2 -2 -1 -2 -1
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D -1 -1 -1 -4 -3 -1 -1 -3 -1 -3 -2 -2 -2 -1 -1
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N -2 -2 -2 -2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
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