23 lines
799 B
Plaintext
Executable File
23 lines
799 B
Plaintext
Executable File
#@UGENE_QUERY
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#
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#To launch this schema choose SITECON profile for TFBS element
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query SimpleGene {
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ORF { type: orf; key: ORF; min-length: 1000; strand: direct; }
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TATA-box { type: search; key: tata-box; pattern: TATA; strand: direct; }
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TFBS { type: sitecon; key: tfbs; err1: 0.2; err2: 0.001123; score: 88; }
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TATA-box.unit--ORF.unit { type: distance; distance_type: end-to-start; min: 0; max: 150; }
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TFBS.unit--ORF.unit { type: distance; distance_type: end-to-start; min: 0; max: 150; }
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.meta{
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visual{
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ORF.unit { geometry: 428,29,278,120,120; }
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TATA-box.unit { geometry: 29,29,165,80,80; }
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TFBS.unit { geometry: 222,29,152,120,120; }
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}
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order { ORF;TATA-box;TFBS; }
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}
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} |