244 lines
9.5 KiB
Plaintext
Executable File
244 lines
9.5 KiB
Plaintext
Executable File
#db_xref_ID|db_xref_PageLink|db_xref_FileLink|db_xref_Comment
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#Official site: http://www.ncbi.nlm.nih.gov/genbank/collab/db_xref
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AceView/WormGenes|https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?exdb=AceView&db=worm&term=%1||AceView Worm Genome
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AFTOL|http://aftol1.biology.duke.edu/pub/primers/getPrimersByAFTOLID?aftol_id=%1||Assembling the Fungal Tree of Life
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AntWeb|http://www.antweb.org/specimen.do?name=%1||Ant Database
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APHIDBASE|http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=%1||Aphid Genome Database
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ApiDB|http://eupathdb.org/eupathdb/showSummary.do?questionFullName=GeneQuestions.GeneBySingleLocusTag&myProp%28single_gene_id%29=%1||Apicomplexan Database Resources
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ApiDB_CryptoDB|http://www.cryptodb.org/cryptodb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=%1||Cryptosporidium Genome Resources
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ApiDB_PlasmoDB|http://www.plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=%1||Plasmodium Genome Resources
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ApiDB_ToxoDB|http://www.toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=%1||Toxoplasma Genome Resources
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ASAP|http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=%1||A Systematic Annotation Package for Community Analysis of Genomes
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ATCC|||American Type Culture Collection database
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ATCC(in host)|||American Type Culture Collection database
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ATCC(dna)|||American Type Culture Collection database
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Axeldb|||A Xenopus laevis database
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BDGP_EST|||Berkeley Drosophila Genome Project EST database
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BDGP_INS|||Berkeley Drosophila Genome Project database -- Insertion
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BEEBASE|||BeeBase
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BEETLEBASE|http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=%1||Tribolium Genome Database -- Insertion
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BGD|http://bovinegenome.org/genepages/btau40/genes/%1||Bovine Genome Database
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BOLD|||Barcode of Life database
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CABRI|||Common Access to Biological Resources and Information Project
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CCAP|||Culture Collection of Algae and Protozoa
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CDD|https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%1||Conserved Domain Database
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CGD|http://www.candidagenome.org/cgi-bin/locus.pl?dbid=%1||Candida Genome Database
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CCDS|https://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=%1&ORGANISM=0&BUILDS=CURRENTBUILDS||The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality.
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dbEST|https://www.ncbi.nlm.nih.gov/sites/entrez?db=nucest&term=%1&pmfilter_MDatLimit=10+Years||EST database maintained at the NCBI.
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dbProbe|https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe&cmd=search&term=%1||NCBI Probe database Public registry of nucleic acid reagents
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dbSNP|https://www.ncbi.nlm.nih.gov/sites/entrez?db=snp&cmd=search&term=%1||Variation database maintained at the NCBI.
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dbSTS|https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists&cmd=search&term=%1||STS database maintained at the NCBI.
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dictyBase|http://dictybase.org/db/cgi-bin/gene_page.pl?primary_id=%1||Dictyostelium genome database
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EcoGene|http://ecogene.org/geneInfo.php?eg_id=%1||Database of Escherichia coli Sequence and Function
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ENSEMBL|https://rest.ensembl.org/sequence/id/%1?content-type=text/x-fasta|https://rest.ensembl.org/sequence/id/%1?content-type=text/x-fasta|Database of automatically annotated genomic data
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EnsemblGenomes|http://ensemblgenomes.org/search/eg/%1||Extending Ensembl across taxonomic space
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EPD|||Eukaryotic Promoter Database
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ERIC|http://www.ericbrc.org/asap/feature_info.php?FeatureID=%1||Enteropathogen Resource Integration Center
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ESTLIB|||EBI's EST library identifier
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FANTOM_DB|||Database of Functional Annotation of Mouse
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FBOL|||International Fungal Working Group Fungal Barcoding
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FLYBASE||| Database of Genetic and molecular data of Drosophila.
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GABI|||Network of Different Plant Genomic Research Projects
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GDB|||Human Genome Database accession numbers
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GeneDB|http://www.genedb.org/genedb/Dispatcher?formType=navBar&organism=All%3A*&name=%1&desc=yes||Curated gene database for Schizosaccharomyces pombe, Leishmania major and Trypanosoma brucei
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GeneID|https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=%1||Entrez Gene Database (replaces NCBI Locus Link)
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GI|https://www.ncbi.nlm.nih.gov/sites/gquery?term=%1||GenInfo identifier, used as a unique sequence identifier for nucleotide and proteins
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GO|||Gene Ontology Database identifier
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GOA|||Gene Ontology Annotation Database Identifier
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GRIN|||Germplasm Resources Information Network
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HGNC|http://www.genenames.org/data/hgnc_data.php?hgnc_id=%1||Human Gene Nomenclature Database
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H-InvDB|||H-Invitational Database
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HMP|||Human Microbiome Project
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HOMD|||Human Oral Microbiome Database
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HPM|||Human Proteome Map
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HSSP|||Database of homology-derived secondary structure of proteins
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IKMC|||International Knockout Mouse Consortium
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IMGT/GENE-DB|||Immunogenetics database, immunoglobulin and T-cell receptor genes
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IMGT/LIGM|||Immunogenetics database, immunoglobulins and T-cell receptors
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IMGT/HLA|||Immunogenetics database, human MHC
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InterPro|http://www.ebi.ac.uk/interpro/entry/%1||InterPro protein sequence database
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IntrepidBio|||Intrepid BioInformatics
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IRD|||Influenza Research Database
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ISFinder|||Insertion sequence elements database
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ISHAM-ITS|||ITS reference database for pathogenic fungi
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JCM|||Japan Collection of Microorganisms
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JGIDB|||JGI Genome Portal
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LocusID|||NCBI LocusLink ID **Discontinued March 2005
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MaizeGDB|||Maize Genome Database unique identifiers
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MedGen|https://www.ncbi.nlm.nih.gov/medgen/?term=%1||Human Medical Genetics
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MGI||| Mouse Genome Informatics
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MIM|https://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=%1|| Mendelian Inheritance in Man numbers
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miRBase|http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?acc=%1||miRBase is the new home of microRNA data on the web, providing data previously accessible from the miRNA Registry.
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MycoBank|||Fungal Nomenclature and Species Bank
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NBRC|||NITE Biological Resource Center
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NextDB|||Nematode Expression Pattern DataBase
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niaEST|||NIA Mouse cDNA Project
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NMPDR|||National Microbial Pathogen Data Resource
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NRESTdb|||Natural Rubber EST database
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OrthoMCL|||Ortholog Groups of Protein Sequences
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Osa1|||Rice Genome Annotation Project
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Pathema|||Pathema Genome Resource
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PBmice|||PiggyBac Mutagenesis Information Center
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PDB|http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=%1|http://files.rcsb.org/view/%1.pdb|Biological macromolecule three dimensional structure database
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PFAM|||Collection of protein families
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PGN|||Plant Genome Network
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Phytozome|||Plant Genome Network
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PIR|||Protein Information Resource accession numbers
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PomBase|http://www.pombase.org/spombe/result/%1||Database of Structural and Functional Data for Schizosaccaromyces pombe
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PSEUDO|||EMBL pseudo protein identifier
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PseudoCap|http://www.pseudomonas.com/getAnnotation.do?locusID=%1||Pseudomonas Genome Database
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RAP-DB|||Rice Annotation Project Database
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RATMAP|||Rat Genome Database
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RBGE_garden|||Royal Botanic Garden Edinburgh Living Collections
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RBGE_herbarium|||Royal Botanic Garden Edinburgh Herbarium
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REBASE|http://rebase.neb.com/cgi-bin/reb_get.pl?enzname=%1||REBASE: The Restriction Enzyme Database
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RFAM|http://rfam.sanger.ac.uk/family?entry=%1||RNA families database of alignments and CMs
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RGD|||Rat Genome Database
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RiceGenes|||Rice database accession numbers
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RZPD|||Resource Centre Primary Database Clone Identifiers
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SEED|||The SEED Database
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SGD|||Saccharomyces Genome Database
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SGN|||SOL Genomics Network
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SK-FST|||Saskatoon Arabidopsis T-DNA mutant population - SK Collection
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SoyBase|||Glycine max Genome Database
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SPTREMBL|http://www.ebi.ac.uk/uniprot/unisave/app/#/search/%1||SWISS-PROT protein sequence database
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SRPDB|||Signal Recognition Particle Database
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SubtiList|||Bacillus subtilis genome sequencing project
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SWISS-PROT|https://www.uniprot.org/uniprot/%1|https://www.uniprot.org/uniprot/%1.txt|The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data.
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TAIR|||Arabidopsis IR
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taxon|||NCBI's taxonomic identifier
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TIGRFAM|||TIGR protein families
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TubercuList|http://tuberculist.epfl.ch/quicksearch.php?gene+name=%1||TubercuList knowledge base
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UNILIB|||Unified Library Database, a library-level view of the EST and SAGE libraries present in dbEST, UniGene and SAGEmap
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UniProtKB/Swiss-Prot|https://www.uniprot.org/uniprot/%1|https://www.uniprot.org/uniprot/%1.txt|section of the UniProt Knowledgebase, containing annotated records
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UniProtKB/TrEMBL|https://www.uniprot.org/uniprot/%1|https://www.uniprot.org/uniprot/%1.txt|section of the UniProt Knowledgebase, containing computationally analysed records waiting for full manual annotation
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UniSTS|https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=%1||NCBI UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments.
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UNITE|||Molecular database for the identification of fungi
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VBASE2|||Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse
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ViPR|||Virus Pathogen Resource
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VectorBase|||Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens
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WorfDB|||C. elegans ORFeome cloning project
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WormBase|||Caenorhabditis elegans Genome Database
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Xenbase|||Xenopus laevis and tropicalis biology and genomics resource
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ZFIN|||Zebrafish Information Network
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